The photos attached show a mock-up motor with the 06-up Gen 4 truck water pump (GM PN 12600767) and an LS2 intake.
This pump will not allow the use of an LS2/3/7 90mm DBW TB unless you use a ~46-48 mm spacer due to the location of the stepping motor location on the TB.

All is not lost, though.
With an LS2/3/7 intake, a Nick Williams 90 mm cable TB will clear with a small spacer and some minor relief grinding on the pump body. A Nick Williams 90 mm DBW TB will clear with no issues since it uses the stepping motor assembly form an LS1/6, which mounts on the side opposite the water outlet.
This pump also works with an LS1 or LS6 intake with a stock cable TB or a DBW TB from a CTS-V or Corvette. With both of these manifolds, you also have provisions for mounting a throttle/cruise control cable bracket.
When installed on a truck using the idler/long-bolt method instead of a bracket to relocate the idler, an NAPA #060990 belt is used. The top radiator hose for the large (6.0L) radiator is GM PN 19130027.
If you have a truck with a return line, the '97 Corvette LS1 fuel rails work nicely on the LS1/6 manifolds. If your truck has a return line system and you have an LS2/3/7 manifold, you have to change to the later (return in tank) system or install a regulator w/return in your line.
I've also added a photo showing the belt clearance with the idler/long-bolt method. It's hard to tell in the photo, but there's about 3/8" or so.